Trajectory 480

Order parameters quality = 0.0553

Computational methods Simulation metadata
System POPS_298K_Berger
Author(s) Tom Piggot
Date 05/01/2022
DOI 10.5281/zenodo.1129425
Publication http://dx.doi.org/10.1021/acs.jpcb.9b06091
Force field Berger
Simulation length (ps) 100050
Trajectory size 153497768
Pre-equilibration time 400
Time left out 0
Temperature (K) 298
Number of particles 20608
Software gromacs
Ions SOD(128)
Water SOL
Lipids - L1 POPS (64)
Lipids - L2 POPS (64)
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Lower leaflet

Lipids


POPS
  • Quality total: 0.0553
  • Quality headgroups: 0.1078
  • Quality tails: 0.029
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Related experiments:

Article DOI Internal ID Type Temperature Actions
10.1039/C4SM00066H 10.1039/C4SM00066H/1 FF 298 View
10.1039/C4SM00066H 10.1039/C4SM00066H/2 FF 298 View
10.1039/C4SM00066H 10.1039/C4SM00066H/3 FF 298 View
10.1021/acs.jctc.9b00824 10.1021/acs.jctc.9b00824/1 OP 298 View
10.1021/acs.jpcb.9b06091 10.1021/acs.jpcb.9b06091/1 OP 298 View

Order Parameters POPS

Download JSON main

Group sn-1

Group sn-2

Group headgroup

Group glycerol backbone

Area per lipid

Form Factor

Experimental and Molecular Dynamics based descriptors

Quality of Order Parameters : 0.0553
OP Quality of headgroups: 0.1078
OP Quality of tails: 0.029
FF Quality: 2.3

Bilayer thickness : 5.1 nm
Area per lipid : 50.8 Å2