Trajectory 53
Order parameters quality = N/A
| Computational methods | Simulation metadata |
|---|---|
| System | 200DEPC_10000SOL_23SOD_23CLA |
| Author(s) | Matti Javanainen |
| Date | 01/10/2021 |
| DOI | 10.5281/zenodo.3592499 |
| Publication | N/A |
| Force field | CHARMM36 |
| Simulation length (ps) | 500100 |
| Trajectory size | 1149476476 |
| Pre-equilibration time | 0 |
| Time left out | 0 |
| Temperature (K) | 310 |
| Number of particles | 62446 |
| Software | gromacs |
| Ions | SOD(23), CLA(23) |
| Water | TIP3 |
| Lipids - L1 | DEPC (100) |
| Lipids - L2 | DEPC (100) |
| Files |
View on GitHub main Download PDB File Link to simulation files |
Hover over a component to view composition data.
Upper leaflet
Lower leaflet
Lipids
DEPC
- Quality total: N/A
- Quality headgroups: N/A
- Quality tails: N/A
Related experiments:
| Article DOI | Internal ID | Type | Temperature | Actions |
|---|
Order Parameters DEPC
Download JSON mainGroup sn-1
Group sn-2
Group headgroup
Group glycerol backbone
Area per lipid
Form Factor
Experimental and Molecular Dynamics based descriptors
Quality of Order Parameters :
N/A
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: N/A
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: N/A
Bilayer thickness :
5 nm
Area per lipid : 65.1 Å2
Area per lipid : 65.1 Å2