Trajectory 813
Order parameters quality = 0.617
| Computational methods | Simulation metadata |
|---|---|
| System | 200DMPC_9000SOL_300K |
| Author(s) | Milla Kurki (Lindström) |
| Date | 15/05/2024 |
| DOI | 10.5281/zenodo.11044615 |
| Publication | N/A |
| Force field | OPLS4 |
| Simulation length (ps) | 499930 |
| Trajectory size | 9320137004 |
| Pre-equilibration time | 0 |
| Time left out | 50 |
| Temperature (K) | 314 |
| Number of particles | 50600 |
| Software | gromacs |
| Ions | N/A |
| Water | SPC |
| Lipids - L1 | DMPC (100) |
| Lipids - L2 | DMPC (100) |
| Files |
View on GitHub main Download PDB File Link to simulation files |
Hover over a component to view composition data.
Upper leaflet
Lower leaflet
Lipids
DMPC
- Quality total: 0.617
- Quality headgroups: 0.6583
- Quality tails: 0.5963
Related experiments:
| Article DOI | Internal ID | Type | Temperature | Actions |
|---|---|---|---|---|
| unpublished/nesterenkoDMPCbOG | unpublished/nesterenkoDMPCbOG/1 | OP | 315 | View |
| 10.1039/B508190D | 10.1039/B508190D/3 | OP | 314 | View |
Order Parameters DMPC
Download JSON mainGroup sn-1
Group sn-2
Group headgroup
Group glycerol backbone
Area per lipid
Form Factor
Experimental and Molecular Dynamics based descriptors
Quality of Order Parameters :
0.617
OP Quality of headgroups: 0.6583
OP Quality of tails: 0.5963
FF Quality: N/A
OP Quality of headgroups: 0.6583
OP Quality of tails: 0.5963
FF Quality: N/A
Bilayer thickness :
4.5 nm
Area per lipid : 64.8 Å2
Area per lipid : 64.8 Å2