Trajectory 748
Order parameters quality = N/A
| Computational methods | Simulation metadata |
|---|---|
| System | POPC_CHARMMdrude2023_303K |
| Author(s) | Kav, Batuhan |
| Date | 11/05/2023 |
| DOI | 10.5281/zenodo.7916287 |
| Publication | N/A |
| Force field | Charmm-Drude polarizable |
| Simulation length (ps) | 200000 |
| Trajectory size | 2215779748 |
| Pre-equilibration time | 0 |
| Time left out | 0 |
| Temperature (K) | 303 |
| Number of particles | 25163 |
| Software | openMM |
| Ions | N/A |
| Water | SWM4 |
| Lipids - L1 | POPC (36) |
| Lipids - L2 | POPC (36) |
| Files |
View on GitHub main Download PDB File Link to simulation files |
Hover over a component to view composition data.
Upper leaflet
Lower leaflet
Lipids
POPC
- Quality total: N/A
- Quality headgroups: N/A
- Quality tails: N/A
Related experiments:
| Article DOI | Internal ID | Type | Temperature | Actions |
|---|---|---|---|---|
| 10.1016/j.bbamem.2011.07.022 | 10.1016/j.bbamem.2011.07.022/2 | FF | 303 | View |
Order Parameters POPC
Download JSON mainGroup sn-1
Group sn-2
Group headgroup
Group glycerol backbone
Area per lipid
Form Factor
Experimental and Molecular Dynamics based descriptors
Quality of Order Parameters :
N/A
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: 0.422
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: 0.422
Bilayer thickness :
4.1 nm
Area per lipid : 65.7 Å2
Area per lipid : 65.7 Å2