Trajectory 563
Order parameters quality = N/A
| Computational methods | Simulation metadata |
|---|---|
| System | 128POPC_5120SOL_303K |
| Author(s) | Melcr, Josef |
| Date | 01/10/2021 |
| DOI | 10.5281/zenodo.153944 |
| Publication | N/A |
| Force field | CHARMM36 |
| Simulation length (ps) | 60010 |
| Trajectory size | 714047336 |
| Pre-equilibration time | 150 |
| Time left out | 0 |
| Temperature (K) | 303.15 |
| Number of particles | 32512 |
| Software | gromacs |
| Ions | N/A |
| Water | TIP3 |
| Lipids - L1 | POPC (64) |
| Lipids - L2 | POPC (64) |
| Files |
View on GitHub main Download PDB File Link to simulation files |
Hover over a component to view composition data.
Upper leaflet
Lower leaflet
Lipids
POPC
- Quality total: N/A
- Quality headgroups: N/A
- Quality tails: N/A
Related experiments:
| Article DOI | Internal ID | Type | Temperature | Actions |
|---|---|---|---|---|
| 10.1016/j.bbamem.2011.07.022 | 10.1016/j.bbamem.2011.07.022/2 | FF | 303 | View |
Order Parameters POPC
Download JSON mainGroup sn-1
Group sn-2
Group headgroup
Group glycerol backbone
Area per lipid
Form Factor
Experimental and Molecular Dynamics based descriptors
Quality of Order Parameters :
N/A
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: 1.222
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: 1.222
Bilayer thickness :
4.2 nm
Area per lipid : 63.9 Å2
Area per lipid : 63.9 Å2