Trajectory 557

Order parameters quality = N/A

Computational methods Simulation metadata
System 200POPC_9000SOL_73CAL_146CLA_350K
Author(s) Javanainen, Matti
Date 29/11/2021
DOI 10.5281/zenodo.259354
Publication N/A
Force field Slipids with ECC-scaled ions (Kohagen)
Simulation length (ps) 800100
Trajectory size 1602051124
Pre-equilibration time 0
Time left out 0
Temperature (K) 350
Number of particles 54019
Software gromacs
Ions CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146)
Water SOL
Lipids - L1 POPC (100)
Lipids - L2 POPC (100)
Files View on GitHub main
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Lower leaflet

Lipids


POPC
  • Quality total: N/A
  • Quality headgroups: N/A
  • Quality tails: N/A
Download Mapping File main

Related experiments:

Article DOI Internal ID Type Temperature Actions

Order Parameters POPC

Download JSON main

Group sn-1

Group sn-2

Group headgroup

Group glycerol backbone

Area per lipid

Form Factor

Experimental and Molecular Dynamics based descriptors

Quality of Order Parameters : N/A
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: N/A

Bilayer thickness : 4.3 nm
Area per lipid : 64.5 Å2