Trajectory 511

Order parameters quality = N/A

Computational methods Simulation metadata
System 200POPC_9000SOL_81SOD_81CLA_310K
Author(s) Javanainen, Matti
Date 12/10/2021
DOI 10.5281/zenodo.35193
Publication N/A
Force field Slipids for lipids, Kohagen for NaCl
Simulation length (ps) 100100
Trajectory size 199059704
Pre-equilibration time 0
Time left out 0
Temperature (K) 310
Number of particles 53962
Software gromacs
Ions CLA(81), SOD(81), CLA(81), SOD(81), CLA(81), SOD(81), CLA(81), SOD(81), CLA(81), SOD(81), CLA(81), SOD(81), CLA(81), SOD(81), CLA(81), SOD(81), CLA(81), SOD(81), CLA(81), SOD(81), CLA(81), SOD(81), CLA(81), SOD(81), CLA(81), SOD(81), CLA(81), SOD(81), CLA(81), SOD(81), CLA(81), SOD(81), CLA(81), SOD(81)
Water SOL
Lipids - L1 POPC (100)
Lipids - L2 POPC (100)
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Lipids


POPC
  • Quality total: N/A
  • Quality headgroups: N/A
  • Quality tails: N/A
Download Mapping File main

Related experiments:

Article DOI Internal ID Type Temperature Actions

Order Parameters POPC

Download JSON main

Group sn-1

Group sn-2

Group headgroup

Group glycerol backbone

Area per lipid

Form Factor

Experimental and Molecular Dynamics based descriptors

Quality of Order Parameters : N/A
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: N/A

Bilayer thickness : 4.1 nm
Area per lipid : 65 Å2