Trajectory 487

Order parameters quality = N/A

Computational methods Simulation metadata
System 204DPPC_52CHOL_166DOPC_16880SOL_46SOD_46CLA_293K
Author(s) Javanainen, Matti; Martinez-Seara, Hector; Vattulainen, Ilpo
Date 21/12/2021
DOI 10.5281/zenodo.3540513
Publication N/A
Force field Slipids
Simulation length (ps) 600100
Trajectory size 2303814768
Pre-equilibration time 0
Time left out 0
Temperature (K) 293
Number of particles 104008
Software gromacs
Ions SOD(46), CLA(46)
Water SOL
Lipids - L1 DPPC:CHOL:DOPC (105:27:83)
Lipids - L2 DPPC:CHOL:DOPC (99:25:83)
Files View on GitHub main
 Download PDB File
 Link to simulation files
Hover over a component to view composition data.
Upper leaflet
Lower leaflet

Lipids


CHOL
  • Quality total: N/A
  • Quality headgroups: N/A
  • Quality tails: N/A
Download Mapping File main
DOPC
  • Quality total: N/A
  • Quality headgroups: N/A
  • Quality tails: N/A
Download Mapping File main
DPPC
  • Quality total: N/A
  • Quality headgroups: N/A
  • Quality tails: N/A
Download Mapping File main

Related experiments:

Article DOI Internal ID Type Temperature Actions

Order Parameters CHOL

Download JSON main

Group tail

Order Parameters DOPC

Download JSON main

Group sn-1

Group sn-2

Group headgroup

Group glycerol backbone

Order Parameters DPPC

Download JSON main

Group sn-1

Group sn-2

Group headgroup

Group glycerol backbone

Area per lipid

Form Factor

Experimental and Molecular Dynamics based descriptors

Quality of Order Parameters : N/A
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: N/A

Bilayer thickness : 0 nm
Area per lipid : 42.9 Å2