Trajectory 339

Order parameters quality = N/A

Computational methods Simulation metadata
System 22CHOL_200POPC_9000SOL_73CAL_146CLA_310K
Author(s) Javanainen, Matti
Date 01/11/2021
DOI 10.5281/zenodo.259349
Publication N/A
Force field Slipids with default Amber ions parameters (type C0)
Simulation length (ps) 2000100
Trajectory size 4128572360
Pre-equilibration time 0
Time left out 0
Temperature (K) 310
Number of particles 55647
Software gromacs
Ions CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146), CAL(73), CLA(146)
Water SOL
Lipids - L1 CHOL:POPC (13:100)
Lipids - L2 CHOL:POPC (9:100)
Files View on GitHub main
 Download PDB File
 Link to simulation files
Hover over a component to view composition data.
Upper leaflet
Lower leaflet

Lipids


CHOL
  • Quality total: N/A
  • Quality headgroups: N/A
  • Quality tails: N/A
Download Mapping File main
POPC
  • Quality total: N/A
  • Quality headgroups: N/A
  • Quality tails: N/A
Download Mapping File main

Related experiments:

Article DOI Internal ID Type Temperature Actions

Order Parameters CHOL

Download JSON main

Group tail

Order Parameters POPC

Download JSON main

Group sn-1

Group sn-2

Group headgroup

Group glycerol backbone

Area per lipid

Form Factor

Experimental and Molecular Dynamics based descriptors

Quality of Order Parameters : N/A
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: N/A

Bilayer thickness : 4.6 nm
Area per lipid : 54.7 Å2