Trajectory 903
Order parameters quality = N/A
| Computational methods | Simulation metadata |
|---|---|
| System | PDPC |
| Author(s) | Mahmoud Moqadam / mahmoud.moqadam@uib.no |
| Date | 02/03/2026 |
| DOI | 10.5281/zenodo.18471696 |
| Publication | N/A |
| Force field | CHARMM36m |
| Simulation length (ps) | 500000.0014907 |
| Trajectory size | 16262000276 |
| Pre-equilibration time | 150 |
| Time left out | 0 |
| Temperature (K) | 303.15 |
| Number of particles | 54200 |
| Software | NAMD |
| Ions | N/A |
| Water | TIP3 |
| Lipids - L1 | PDPC (100) |
| Lipids - L2 | PDPC (100) |
| Files |
View on GitHub main Download PDB File Link to simulation files |
Hover over a component to view composition data.
Upper leaflet
Lower leaflet
Lipids
PDPC
- Quality total: N/A
- Quality headgroups: N/A
- Quality tails: N/A
Related experiments:
| Article DOI | Internal ID | Type | Temperature | Actions |
|---|---|---|---|---|
| 10.1016/j.chemphyslip.2020.104892 | 10.1016/j.chemphyslip.2020.104892/1 | FF | 303 | View |
Order Parameters PDPC
Download JSON mainGroup sn-1
Group sn-2
Group headgroup
Group glycerol backbone
Area per lipid
Form Factor
Experimental and Molecular Dynamics based descriptors
Quality of Order Parameters :
N/A
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: 2.9733
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: 2.9733
Bilayer thickness :
4 nm
Area per lipid : 70.4 Å2
Area per lipid : 70.4 Å2