Trajectory 728
Order parameters quality = N/A
| Computational methods | Simulation metadata |
|---|---|
| System | DPPC_SOL_323K |
| Author(s) | Ollila, O. H. Samuli |
| Date | 23/12/2022 |
| DOI | 10.5281/zenodo.7476579 |
| Publication | https://doi.org/10.1021/acs.jctc.1c00951 |
| Force field | CHARMM36-LJPME |
| Simulation length (ps) | 300000 |
| Trajectory size | 7080529532 |
| Pre-equilibration time | 0 |
| Time left out | 0 |
| Temperature (K) | 323 |
| Number of particles | 64224 |
| Software | openMM |
| Ions | N/A |
| Water | TIP3 |
| Lipids - L1 | DPPC (144) |
| Lipids - L2 | DPPC (144) |
| Files |
View on GitHub main Download PDB File Link to simulation files |
Hover over a component to view composition data.
Upper leaflet
Lower leaflet
Lipids
DPPC
- Quality total: N/A
- Quality headgroups: N/A
- Quality tails: N/A
Related experiments:
| Article DOI | Internal ID | Type | Temperature | Actions |
|---|---|---|---|---|
| 10.1016/j.bbamem.2011.07.022 | 10.1016/j.bbamem.2011.07.022/4 | FF | 323 | View |
Order Parameters DPPC
Download JSON mainGroup sn-1
Group sn-2
Group headgroup
Group glycerol backbone
Area per lipid
Form Factor
Experimental and Molecular Dynamics based descriptors
Quality of Order Parameters :
N/A
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: 0.798
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: 0.798
Bilayer thickness :
4.2 nm
Area per lipid : 62.5 Å2
Area per lipid : 62.5 Å2