Trajectory 682

Order parameters quality = 0.2349

Computational methods Simulation metadata
System Slipids_POPC_CHOL47_L
Author(s) Matti Javanainen
Date 17/10/2022
DOI 10.5281/zenodo.7022749
Publication N/A
Force field Slipids
Simulation length (ps) 1001000
Trajectory size 1865169244
Pre-equilibration time 0
Time left out 100
Temperature (K) 298.15
Number of particles 491520
Software gromacs
Ions N/A
Water TP3
Lipids - L1 POPC:CHOL (512:448)
Lipids - L2 POPC:CHOL (512:448)
Files View on GitHub main
 Download PDB File
 Link to simulation files
Hover over a component to view composition data.
Upper leaflet
Lower leaflet

Lipids


CHOL
  • Quality total: 0.4023
  • Quality headgroups: N/A
  • Quality tails: N/A
Download Mapping File main
POPC
  • Quality total: 0.4737
  • Quality headgroups: 0.5911
  • Quality tails: 0.41495
Download Mapping File main

Related experiments:

Article DOI Internal ID Type Temperature Actions
10.1021/acs.jctc.3c00648 10.1021/acs.jctc.3c00648/10 FF 300 View
10.1021/acs.jctc.3c00648 10.1021/acs.jctc.3c00648/9 FF 300 View
10.1039/c2cp42738a 10.1039/c2cp42738a/5 OP 300 View

Order Parameters CHOL

Download JSON main

Group tail

Order Parameters POPC

Download JSON main

Group sn-1

Group sn-2

Group headgroup

Group glycerol backbone

Area per lipid

Form Factor

Experimental and Molecular Dynamics based descriptors

Quality of Order Parameters : 0.2349
OP Quality of headgroups: 0.1681
OP Quality of tails: 0.2182
FF Quality: 1.7517

Bilayer thickness : 4.6 nm
Area per lipid : 42 Å2