Trajectory 404

Order parameters quality = N/A

Computational methods Simulation metadata
System 288DPPG_11232SOL_288SOD_314K
Author(s) Favela-Rosales, Fernando
Date 02/11/2021
DOI 10.5281/zenodo.546136
Publication N/A
Force field Slipids
Simulation length (ps) 50020
Trajectory size 646232904
Pre-equilibration time 150
Time left out 0
Temperature (K) 314
Number of particles 69408
Software gromacs
Ions SOD(288), SOD(288), SOD(288), SOD(288), SOD(288), SOD(288), SOD(288), SOD(288), SOD(288), SOD(288), SOD(288), SOD(288), SOD(288), SOD(288), SOD(288), SOD(288), SOD(288), SOD(288), SOD(288)
Water SOL
Lipids - L1 DPPG (144)
Lipids - L2 DPPG (144)
Files View on GitHub main
 Download PDB File
 Link to simulation files
Hover over a component to view composition data.
Upper leaflet
Lower leaflet

Lipids


DPPG
  • Quality total: N/A
  • Quality headgroups: N/A
  • Quality tails: N/A
Download Mapping File main

Related experiments:

Article DOI Internal ID Type Temperature Actions

Order Parameters DPPG

Download JSON main

Group sn-1

Group sn-2

Group headgroup

Group glycerol backbone

Area per lipid

Form Factor

Experimental and Molecular Dynamics based descriptors

Quality of Order Parameters : N/A
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: N/A

Bilayer thickness : 4 nm
Area per lipid : 61.4 Å2