Trajectory 399

Order parameters quality = N/A

Computational methods Simulation metadata
System 22CHOL_200POPC_9000SOL_21SOD_21CLA_310K
Author(s) Javanainen, Matti
Date 29/11/2021
DOI 10.5281/zenodo.259343
Publication N/A
Force field Slipids with ECC-scaled ions (Kohagen)
Simulation length (ps) 200100
Trajectory size 411098200
Pre-equilibration time 0
Time left out 0
Temperature (K) 310
Number of particles 55470
Software gromacs
Ions SOD(21), CLA(21)
Water SOL
Lipids - L1 CHOL:POPC (10:100)
Lipids - L2 CHOL:POPC (12:100)
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Lower leaflet

Lipids


CHOL
  • Quality total: N/A
  • Quality headgroups: N/A
  • Quality tails: N/A
Download Mapping File main
POPC
  • Quality total: N/A
  • Quality headgroups: N/A
  • Quality tails: N/A
Download Mapping File main

Related experiments:

Article DOI Internal ID Type Temperature Actions

Order Parameters CHOL

Download JSON main

Group tail

Order Parameters POPC

Download JSON main

Group sn-1

Group sn-2

Group headgroup

Group glycerol backbone

Area per lipid

Form Factor

Experimental and Molecular Dynamics based descriptors

Quality of Order Parameters : N/A
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: N/A

Bilayer thickness : 4.3 nm
Area per lipid : 59.7 Å2