Trajectory 370

Order parameters quality = N/A

Computational methods Simulation metadata
System 102POPC_22POPS_4290SOL_106POT_80CLA_310K
Author(s) Cwiklik, Lukasz
Date 27/03/2022
DOI 10.5281/zenodo.838225
Publication 10.1016/j.bbamem.2011.11.033
Force field Berger
Simulation length (ps) 50020
Trajectory size 182053412
Pre-equilibration time 150
Time left out 0
Temperature (K) 310
Number of particles 19790
Software gromacs
Ions POT(106), CLA(80)
Water SOL
Lipids - L1 POPC:POPS (51:13)
Lipids - L2 POPC:POPS (51:13)
Files View on GitHub main
 Download PDB File
 Link to simulation files
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Upper leaflet
Lower leaflet

Lipids


POPS
  • Quality total: N/A
  • Quality headgroups: N/A
  • Quality tails: N/A
Download Mapping File main
POPC
  • Quality total: N/A
  • Quality headgroups: N/A
  • Quality tails: N/A
Download Mapping File main

Related experiments:

Article DOI Internal ID Type Temperature Actions

Order Parameters POPS

Download JSON main

Group sn-1

Group sn-2

Group headgroup

Group glycerol backbone

Order Parameters POPC

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Group sn-1

Group sn-2

Group headgroup

Group glycerol backbone

Area per lipid

Form Factor

Experimental and Molecular Dynamics based descriptors

Quality of Order Parameters : N/A
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: N/A

Bilayer thickness : 4.8 nm
Area per lipid : 56.1 Å2