Trajectory 215

Order parameters quality = N/A

Computational methods Simulation metadata
System 1032DPPC_120CHOL_46440SOL_124SOD_124CLA_310K
Author(s) Javanainen, Matti; Martinez-Seara, Hector; Vattulainen, Ilpo
Date 29/11/2021
DOI 10.5281/zenodo.439066
Publication 10.1038/s41598-017-01247-9
Force field Slipids
Simulation length (ps) 1400100
Trajectory size 14780619824
Pre-equilibration time 0
Time left out 0
Temperature (K) 310
Number of particles 282608
Software gromacs
Ions SOD(124), CLA(124)
Water SOL
Lipids - L1 DPPC:CHOL (516:60)
Lipids - L2 DPPC:CHOL (516:60)
Files View on GitHub main
 Download PDB File
 Link to simulation files
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Upper leaflet
Lower leaflet

Lipids


CHOL
  • Quality total: N/A
  • Quality headgroups: N/A
  • Quality tails: N/A
Download Mapping File main
DPPC
  • Quality total: N/A
  • Quality headgroups: N/A
  • Quality tails: N/A
Download Mapping File main

Related experiments:

Article DOI Internal ID Type Temperature Actions

Order Parameters CHOL

Download JSON main

Group tail

Order Parameters DPPC

Download JSON main

Group sn-1

Group sn-2

Group headgroup

Group glycerol backbone

Area per lipid

Form Factor

Experimental and Molecular Dynamics based descriptors

Quality of Order Parameters : N/A
OP Quality of headgroups: N/A
OP Quality of tails: N/A
FF Quality: N/A

Bilayer thickness : 4.6 nm
Area per lipid : 50.8 Å2